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Database


The current release of the e-Fungi database is themed "Function" and provides genomic and functional data for the following 34 fairly diverse fungal genomes and 2 oomycetes.

genome taxonomy pathogenicity growth form
Aspergillus fumigatus Ascomycete - Eurotiomycetes animal pathogen filamentous
Aspergillus nidulans Ascomycete - Eurotiomycetes non pathogen filamentous
Aspergillus niger Ascomycete - Eurotiomycetes non pathogen filamentous
Aspergillus oryzae Ascomycete - Eurotiomycetes non pathogen filamentous
Aspergillus terreus Ascomycete - Eurotiomycetes animal pathogen filamentous
Botrytis cinerea Ascomycete - Leotiomycetes plant pathogen filamentous
Candida albicans Ascomycete - Saccharomycetes animal pathogen psuedo hyphae - dimorphic
Candida glabrata Ascomycete - Saccharomycetes animal pathogen psuedo hyphae - dimorphic
Candida lusitaniae Ascomycete - Saccharomycetes animal pathogen yeast - dimorphic
Chaetomium globosum Ascomycete - Sordariomycetes animal pathogen filamentous
Coccidioides immitis Ascomycete - Eurotiomycetes animal pathogen filamentous
Debaryomyces hansenii Ascomycete - Saccharomycetes non pathogen yeast - dimorphic
Encephalitozoon cuniculi Microsporidia animal pathogen microsporidia
Eremothecium gossypii Ascomycete - Saccharomycetes plant pathogen yeast - dimorphic
Gibberella zeae Ascomycete - Sordariomycetes plant pathogen filamentous
Kluyveromyces lactis Ascomycete - Saccharomycetes non pathogen yeast
Kluyveromyces waltii Ascomycete - Saccharomycetes non pathogen yeast
Magnaporthe grisea Ascomycete - Sordariomycetes plant pathogen filamentous
Neurospora crassa Ascomycete - Sordariomycetes non pathogen filamentous
Phanerochaete chrysosporium Basidiomycete - Homobasidiomycota non pathogen filamentous
Phytophthora ramorum Oomycete plant pathogen filamentous
Phytophthora sojae Oomycete plant pathogen filamentous
Rhizopus oryzae Zygomycota - Mucorales animal pathogen filamentous
Saccharomyces bayanus Ascomycete - Saccharomycetes non pathogen yeast
Saccharomyces castellii Ascomycete - Saccharomycetes non pathogen yeast
Saccharomyces cerevisiae Ascomycete - Saccharomycetes non pathogen yeast
Saccharomyces kluyveri Ascomycete - Saccharomycetes non pathogen yeast
Saccharomyces kudriavzevii Ascomycete - Saccharomycetes non pathogen yeast
Saccharomyces mikatae Ascomycete - Saccharomycetes non pathogen yeast
Saccharomyces paradoxus Ascomycete - Saccharomycetes non pathogen yeast
Schizosaccharomyces pombe Ascomycete - Schizosaccharomycetes non pathogen yeast - fission
Sclerotinia sclerotiorum Ascomycete - Leotiomycetes plant pathogen filamentous
Stagonospora nodorum Ascomycete - Dothideomycetes plant pathogen filamentous
Trichoderma reesei Ascomycete - Sordariomycetes non pathogen filamentous
Ustilago maydis Basidiomycete - Ustilaginomycota plant pathogen filamentous
Yarrowia lipolytica Ascomycete - Saccharomycetes non pathogen yeast - dimorphic

The following analyses have been performed over the data and the results have been integrated into the warehouse:

  • MCL
  • OrthoMCL
  • PSORT II prediction of protein localisation sites in cells
  • WoLF PSORT prediction or protein localisation
  • SignalP prediction of secreted proteins
  • Pfam domain identification

The warehouse also contains EST data of the following genomes:

  • Aspergillus nidulans
  • Gibberella zeae
  • Magnaporthe grisea
  • Phanerochaete chrysosporium
  • Phytophthora sojae
  • Saccharomyces cerevisiae
  • Schizosaccharomyces pombe
  • Trichoderma reesei
  • Ustilago maydis

For further information about the database and how to access it, please refer to the documentation.

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e-Fungi has been funded by the BBSRC Bioinformatics and E-science Programme II