Description:

Retrieve annotation for all the proteins in a OrthoMCL cluster of interest.

Runtime:

Can take about 1 or 2 minutes to complete depending on the size of the cluster.

Input:

Details

OrthoMCL cluster ID	Identifier of the OrthoMCL cluster of interest.

Examples

OrthoMCL cluster ID
ORTHOMCL1
ORTHOMCL27
ORTHOMCL513

Output:

Description

Annotation for all proteins in the OrthoMCL cluster of interest. Annotation includes GO and Enzyme annotation, KEGG pathways the proteins are known to be involved in, identified Pfam motifs, results of Wolf-PSort, PSort and SignalP predictions.

Details

Protein ID	Identifier of the protein.
Symbol	Symbol of the protein.
Genome	Genome that the protein belongs to.
Gene ID	Identifier of the gene.
Locus Tag	Locus Tag of the gene.
Chr	Chromosome on which the gene is located.
Start	Start position of the gene (in bp).
MCL cluster ID	Identifier of the MCL cluster in which the protein can be found.
OrthoMCL cluster ID	Identifier of the OrthoMCL cluster in which the protein can be found.
PSort Prediction	Sub-cellular localisation of the protein as predicted by PSort.
Wolf-PSort Prediction	Sub-cellular localisation of the protein as predicted by Wolf-PSort.
SignalP Prediction	Information whether the protein has been predicted to be a secretory or non-secretory protein (prediction done using SignalP).
GO Annotations	List of all the GO annotations assigned to the protein.
Pfam A Annotations	List of all the Pfam A domains that have been identified for the protein.
Enzymes	List of all the Enzyme annotations assigned to the protein.
Pathways	List of all the KEGG pathways which the protein is part of.
Protein Sequence	Sequence of the protein.