Description:

Retrieve all clusters that contain proteins of a given genome.

Input:

Details

species	name of the genome of interest; to retrieve a list of genomes from the database, the button "Existing Values..." can be used.

Examples

species
Kluyveromyces lactis
Phytophthora sojae
Trichoderma reesei

Output:

Description

information about the content of the clusters found, such as, which species do the proteins in a cluster belong to

Details

cluster_id	id of the cluster
genome	genome that has been provided as input
no_of_genomes	number of genomes with proteins in the cluster
no_of_proteins	number of proteins in the cluster
non_pathogenic_fungi	a list of the non pathogenic fungi with proteins in the cluster
animal_pathogens	a list of the animal pathogenic fungi with proteins in the cluster
plant_pathogens	a list of the plant pathogenic fungi with proteins in the cluster
filamentous_fungi	a list of the filamentous fungi with proteins in the cluster
yeasts	a list of the yeasts with proteins in the cluster
links	Links that enable the retrieval of the genomes with proteins in the cluster as well as the proteins in the cluster. Furthermore, the query Mcl Cluster analysis - get the number of proteins for each genome in a given cluster can be executed which will take the chosen cluster as input.