Description:

For all MCL clusters containing proteins of a given genome the number of paralogs in the cluster are calculated.

Runtime:

Can take about 2-3 minutes to complete.

Input:

Details

Genome	Name of the genome of interest; to retrieve a list of genomes from the database, the button "Existing Values..." can be used.

Examples

Genome
Aspergillus nidulans
Phytophthora sojae
Schizosaccharomyces pombe

Output:

Description

For each number n of genomes in a cluster with n = 1,..,27 the number of cluster with that number of genomes are calculated as well as the relative frequency.

Details

Cluster ID	Identifier of the cluster
Genome	Genome provided as input
# Proteins	Number or proteins in the cluster
# Paralogs	Number of paralogs in the cluster for the input genome
# Genomes	Number of genomes in the cluster
Navigation	Links that enable the retrieval of the genomes with proteins in the cluster as well as the proteins in the cluster. Furthermore, the query Mcl Cluster analysis - Get the number of proteins for each genome in a given MCL cluster. can be executed which will take the chosen cluster as input.